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Introduction to data science and Python programming for medical research (2025)


PhD level course at Uppsala University medical faculty spring 2025.
Schedule: [pdf]
Additional source code: [zip]

Lectures and exercises


Lecture 1: Introduction
Lecture 1 slides: [pdf]
Lecture 1 exercises: [pdf]
Lecture 1 code: [zip]

Lecture 2: Python programming
Lecture 2 slides: [pdf]
Lecture 2 exercises: [pdf]
Lecture 2 code: [zip]

Lecture 3: Numpy and Matplotlib
Lecture 3 slides: [pdf]
Lecture 3 exercises: [pdf]
Lecture 3 code: [zip]

Lecture 4: Statistics
Lecture 4 slides: [pdf]
Lecture 4 exercises: [pdf]
Lecture 4 code: [zip]
Lecture 4 data: [zip]

Lecture 5: Regression
Lecture 5 slides: [pdf]
Lecture 5 exercises: [pdf]
Lecture 5 code: [zip]
Lecture 5 data: [zip]

Lecture 6: High-dimensional data
Lecture 6 slides: [pdf]
Lecture 6 exercises: [pdf]
Lecture 6 code: [zip]

Lecture 7: Clustering
Lecture 7 slides: [pdf]
Lecture 7 exercises: [pdf]
Lecture 7 code: [zip]

Lecture 8: PCA
Lecture 8 slides: [pdf]
Lecture 8 exercises: [pdf]
Lecture 8 code: [zip]
Lecture 8 data: [zip]

Lecture 9: Manifold learning
Lecture 9 slides: [pdf]
Lecture 9 exercises: [pdf]
Lecture 9 code: [zip]
Lecture 9 data: [zip]

Lecture 10: Preprocessing, non-linear methods and brief history
Lecture 10 slides: [pdf]
Lecture 10 exercises: [pdf]
Lecture 10 code: [zip]

Lecture 11: Image processing and analysis
Lecture 11 slides: [pdf]
Lecture 11 exercises: [pdf]
Lecture 11 code: [zip]
Lecture 11 data: [zip]

Lecture 12: Neural networks and deep learning
Lecture 12 slides: [pdf]
Lecture 12 exercises: [pdf]
Lecture 12 code: [zip]
Lecture 12 data: [zip]

Lecture 13: Image analysis using deep learning
Lecture 13 slides: [pdf]
Lecture 13 exercises: [pdf]
Lecture 13 code: [zip]
Lecture 13 data: [zip]

Lecture 14: Summary
Lecture 14 slides: [pdf]

Lecture 15: Example exam questions
Lecture 15 slides: [pdf]


Links



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